Structural Neuroimaging With OS X

Main menu

Skip to content
  • About Me
  • Contact Me
  • Contribute a post to this site!

Tag Archives: segmentation

Converting FreeSufer aseg Labels to Individual Volume Masks

June 4, 2010

Note: There are faster (and better) methods than this for creating volumetric masks from aseg labels. I wrote this guide in part to demonstrate some of the features of multiple imaging programs. See this post for a faster method. You … Continue reading →

Posted in Conversions, FreeSurfer, ITK-SNAP | Replies: 3

Tag Cloud

alias ANTS aseg awk Bash bash_profile bbregister converting CPU critical thinking critique dcn2nii debian dicom diffusion fiber tracking flirt fnirt FreeSurfer fsl fslmaths FSLView iMac ITK-SNAP labels linux Mac Pro mri mri_annotation2label mri_label2vol mrtrix neuroimaging neuroscience os x processing RAM registration rois science scripting TBSS template text tkregister2 video

Recent Posts

  • GitHub
  • When not to mix results from FreeSurfer and FSL
  • Brain Template Creation with ANTs
  • Introduction to MRtrix 3
  • FSL Version 5 in Mountain Lion
  • Using awk to truncate text files
  • Using FreeSurfer’s bbregister for Image Registration
  • NeuroDebian
  • A Great Resource for Advanced Bash Scripting
  • How much computer do you need for MRI processing?
  • Pitfalls in Analyzing Diffusion Data
  • The Art of Neuroimaging
  • FreeSurfer Tools for Mask Manipulation
  • Bash For Loops (Plus a Little Scripting)
  • An Introduction to the Cingulum
Powered by WordPress and Foghorn