Note: There are faster (and better) methods than this for creating volumetric masks from aseg labels. I wrote this guide in part to demonstrate some of the features of multiple imaging programs. See this post for a faster method. You … Continue reading
Note from February 2015: The methods in this guide work but do not necessarily represent current or best practice. My methods have changed over the years. I’ll try to go and update all my guides but I might never get … Continue reading
Understanding the bash environment and simple bash scripting can really speed up your neuroimaging work. While I am not an expert in scripting, I have learned a few tricks that can make life easier. If you are interested in learning … Continue reading
Update: Please refer to the comments below to read about updated versions of the software (https://www.nitrc.org/frs/?group_id=889). Neuroimaging software is frequently advancing so check with man pages or other documentation for options and changes. Note: While I will try to be … Continue reading