Structural Neuroimaging With OS X

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Category: Fiber Tracking

Introduction to MRtrix 3

February 10, 2015

I’ve been trying out MRtrix 3 recently. It’s impressive software. I’ll post a guide about installing it and using it later but there is enough information to get started on the Google+ site, the GitHub repository (and associated sparse but growing wiki), and … Continue reading →

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The Art of Neuroimaging

November 18, 2010

Here are a few of my favorite fiber tracking images I’ve created (and one non-diffusion image). There is an art to neuroimaging. Sorry for the obnoxious watermarks; because all the images are funded by the grant NINDS K23NS060660 (Catherine Price, University … Continue reading →

Posted in Fiber Tracking | Replies: 3

An Introduction to the Cingulum

September 13, 2010

I created this brief video of the cingulum. I am posting it here because it showcases some of the diffusion scan fiber tracking we do. The brain is that of a >60 year old male who is part of our … Continue reading →

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High Angular Resolution Diffusion Imaging versus Diffusion Tensor Imaging

August 14, 2010

One of my main interests in neuroimaging is diffusion MRI fiber tracking. There are multiple methods for tracking including ones based on a diffusion tensor (e.g., FSL’s FDT program). There are also other, more complex mathematical models for describing and … Continue reading →

Posted in Fiber Tracking, FreeSurfer | Replies: 3

Tag Cloud

alias ANTS aseg awk Bash bash_profile bbregister converting CPU critical thinking critique dcn2nii debian dicom diffusion fiber tracking flirt fnirt FreeSurfer fsl fslmaths FSLView iMac ITK-SNAP labels linux Mac Pro mri mri_annotation2label mri_label2vol mrtrix neuroimaging neuroscience os x processing RAM registration rois science scripting TBSS template text tkregister2 video

Recent Posts

  • GitHub
  • When not to mix results from FreeSurfer and FSL
  • Brain Template Creation with ANTs
  • Introduction to MRtrix 3
  • FSL Version 5 in Mountain Lion
  • Using awk to truncate text files
  • Using FreeSurfer’s bbregister for Image Registration
  • NeuroDebian
  • A Great Resource for Advanced Bash Scripting
  • How much computer do you need for MRI processing?
  • Pitfalls in Analyzing Diffusion Data
  • The Art of Neuroimaging
  • FreeSurfer Tools for Mask Manipulation
  • Bash For Loops (Plus a Little Scripting)
  • An Introduction to the Cingulum
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