{"id":254,"date":"2012-09-20T19:27:41","date_gmt":"2012-09-21T00:27:41","guid":{"rendered":"http:\/\/brainybehavior.com\/neuroimaging\/?p=254"},"modified":"2012-09-20T19:27:41","modified_gmt":"2012-09-21T00:27:41","slug":"fsl-version-5-in-mountain-lion","status":"publish","type":"post","link":"https:\/\/brainybehavior.com\/neuroimaging\/2012\/09\/fsl-version-5-in-mountain-lion\/","title":{"rendered":"FSL Version 5 in Mountain Lion"},"content":{"rendered":"<p>I just upgraded to FSL version 5 on my MacBook Pro running Mountain Lion. The installation was straightforward using the new install script from FMRIB:\u00a0<a href=\"http:\/\/fsl.fmrib.ox.ac.uk\/fsl\/fslwiki\/FslInstallation\">http:\/\/fsl.fmrib.ox.ac.uk\/fsl\/fslwiki\/FslInstallation<\/a><\/p>\n<p>Download the python script and then in Terminal navigate to the download location and run: <code>python fslinstaller.py<\/code><\/p>\n<p>That will download the files and then install FSL with minimal user interaction (you can specify an installation path &#8211; on a single user computer it&#8217;s fine to use the default path, on shared computers, I find a better install path is something like \/usr\/share).<\/p>\n<p>If you are running OS X 10.8 (Mountain Lion), you need to install XQuartz (you need an X11 environment regardless of the version of OS X you are running):\u00a0<a href=\"http:\/\/xquartz.macosforge.org\/landing\/\">http:\/\/xquartz.macosforge.org\/landing\/<\/a>. This version of XQuartz works with OS X 10.6 and later (and is what you have to install with Mountain Lion).<\/p>\n<p>Now everything should be set up to run FSL 5 on a Mac running OS X 10.8. I&#8217;ve not run into any problems so far. Thanks to FMRIB, installation of FSL is now easier than it already was.<a href=\"http:\/\/brainybehavior.com\/neuroimaging\/wp-content\/uploads\/2012\/09\/FSL-5.0.0-92012-806-PM.png\"><img loading=\"lazy\" decoding=\"async\" class=\"aligncenter size-medium wp-image-257\" title=\"FSL 5.0.0\" src=\"http:\/\/brainybehavior.com\/neuroimaging\/wp-content\/uploads\/2012\/09\/FSL-5.0.0-92012-806-PM-115x300.png\" alt=\"\" width=\"115\" height=\"300\" srcset=\"https:\/\/brainybehavior.com\/neuroimaging\/wp-content\/uploads\/2012\/09\/FSL-5.0.0-92012-806-PM-115x300.png 115w, https:\/\/brainybehavior.com\/neuroimaging\/wp-content\/uploads\/2012\/09\/FSL-5.0.0-92012-806-PM.png 186w\" sizes=\"(max-width: 115px) 100vw, 115px\" \/><\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>I just upgraded to FSL version 5 on my MacBook Pro running Mountain Lion. The installation was straightforward using the new install script from FMRIB:\u00a0http:\/\/fsl.fmrib.ox.ac.uk\/fsl\/fslwiki\/FslInstallation Download the python script and then in Terminal navigate to the download location and run: &hellip; <a href=\"https:\/\/brainybehavior.com\/neuroimaging\/2012\/09\/fsl-version-5-in-mountain-lion\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":257,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[40],"tags":[27,61],"_links":{"self":[{"href":"https:\/\/brainybehavior.com\/neuroimaging\/wp-json\/wp\/v2\/posts\/254"}],"collection":[{"href":"https:\/\/brainybehavior.com\/neuroimaging\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/brainybehavior.com\/neuroimaging\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/brainybehavior.com\/neuroimaging\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/brainybehavior.com\/neuroimaging\/wp-json\/wp\/v2\/comments?post=254"}],"version-history":[{"count":4,"href":"https:\/\/brainybehavior.com\/neuroimaging\/wp-json\/wp\/v2\/posts\/254\/revisions"}],"predecessor-version":[{"id":260,"href":"https:\/\/brainybehavior.com\/neuroimaging\/wp-json\/wp\/v2\/posts\/254\/revisions\/260"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/brainybehavior.com\/neuroimaging\/wp-json\/wp\/v2\/media\/257"}],"wp:attachment":[{"href":"https:\/\/brainybehavior.com\/neuroimaging\/wp-json\/wp\/v2\/media?parent=254"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/brainybehavior.com\/neuroimaging\/wp-json\/wp\/v2\/categories?post=254"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/brainybehavior.com\/neuroimaging\/wp-json\/wp\/v2\/tags?post=254"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}