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Tag Archives: mri_convert

rawavg.nii.gz - aseg2raw.nii.gz - ITK-SNAP 2.0.0

Saving Individual Labels From FreeSurfer’s aseg – Method 2

June 22, 2010

In a previous post I wrote about converting FreeSurfer aseg (sub-cortical segmentation) labels to volumetric masks. I demonstrated a graphical way of pulling out individual labels; however, it can be fairly tedious. There are around 50 different labels in the … Continue reading →

Posted in Conversions, FreeSurfer, ITK-SNAP | Replies: 5

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"for loops" alias ANTS aseg Bash bash_profile bet binary mask cingulum conversions converting CPU critical thinking dcn2nii debian dicom diffusion fiber tracking FreeSurfer fsl fslmaths FSLView iMac itk- ITK-SNAP labels linux Mac Pro mask mri mri_annotation2label mri_convert mri_label2vol neuroimaging NIfTI processing RAM registration science scripting segmentation SyN T1 tkregister2 video

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